Overview
Concepts
Classes
Specializations
Shortcuts
Functions
Alignment
Alignments
Alphabets
Array Handling
Chaining
Comparisons
Container
Containers
Content Manipulation
Dependent Objects
File
Graph
  Alignment Graph
assignStringSet
convertAlignment
findVertex
fragmentBegin
fragmentLength
getFirstCoveredPosition
getLastCoveredPosition
getProjectedPosition
getStringSet
label
sequenceId
stringSet
  Automaton
  Oracle
  Tree
  Trie
  Word Graph
Index
Input/Output
Iteration
Memory
Miscellaneous
Motif Search
Pipelining
Searching
Sequences
Metafunctions
Tags
Adaptions
Examples
Searching